Research

My research focuses on machine learning applied to omics data for patient stratification and precision medicine. For interactive tools and passion projects, see Projects. Full publication list: Publications & Presentations →

SmartQuery - Intelligent Experiment Design

Machine LearningActive LearningData VisualizationWeb ApplicationStreamlit

Monitor and prioritize ongoing experiments with live metrics.

Gene Co-expression Visualization

BioinformaticsData VisualizationWeb ApplicationD3.jsGo

A Go program with an interactive D3.js web app to detect and explore gene co-expression clusters from an expression matrix.

PROTOCOL Dashboard — Bayesian Optimization for Cloud Labs

Machine LearningBayesian OptimizationWeb ApplicationPublicationShiny

Bulk RNA seq pipeline

Snakemake-based

BioinformaticsPipelineAutomationPython